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Abstract
The C. elegans embryo is a powerful model system for studying the mechanics of metazoan cell division. Its primary advantage is that the architecture of the syncytial gonad makes it possible to use RNAi to generate oocytes whose cytoplasm is reproducibly (typically >95%) depleted of targeted essential gene products via a process that does not depend exclusively on intrinsic protein turnover. The depleted oocytes can then be analyzed as they attempt their first mitotic division following fertilization. Here we outline the characteristics that contribute to the usefulness of the C. elegans embryo for cell division studies. We provide a timeline for the first embryonic mitosis and highlight some of its key features. We also summarize some of the recent discoveries made using this system, particularly in the areas of nuclear envelope assembly/ dissassembly, centrosome dynamics, formation of the mitotic spindle, kinetochore assembly, chromosome segregation, and cytokinesis.
The C. elegans embryo is a powerful model system for studying the mechanics of metazoan cell division. Its primary advantage is that the syncytial gonad makes it possible to use RNA interference (RNAi) to generate oocytes whose cytoplasm is reproducibly (>95%) depleted of targeted essential gene products. Introduction of dsRNA rapidly catalyzes the destruction of the corresponding mRNA in many different systems. However, depletion of pre-existing protein is generally a slow process that depends on the half-life of the targeted protein. In contrast, in the C. elegans gonad, the protein present when the dsRNA is introduced is depleted by the continual packaging of maternal cytoplasm into oocytes (Figure 1). Since depletion relies on the rate of embryo production instead of protein half-life, the kinetics tend to be similar for different targets. By 36-48 hours after introduction of the dsRNA, newly formed oocytes are typically >95% depleted of the target protein.
Figure 1. The generation of oocytes depleted of target proteins by RNAi in C. elegans does not require intrinsic protein turnover. (A) The gonad is a syncytial tube lined with nuclei in various stages of meiotic prophase. The meiotic nuclei contribute mRNA that is translated to generate the protein that is loaded into the developing oocytes. The meiotic nuclei and all of the developing oocytes except the final 4-5 (Maddox et al., 2005) are diffusionally connected to the rachis (the central cytoplasmic core of the syncytial gonad). Introduction of a dsRNA triggers the degradation of the corresponding mRNA. However, the syncytial gonad and connected oocytes still contain the target protein that was present at the time of injection. Maternal stores are depleted by the continual packaging of gonad cytoplasm into developing oocytes. By 36 to 48 hours after introduction of the dsRNA oocytes are typically >95% depleted of the target protein. (B) Quantitative western blot of worms injected with a dsRNA against ANI-1, a protein required for cortical contractility in the early embryo (Maddox et al., 2005). Serial dilutions of identically processed control worms were loaded to quantify the depletion level. ANI-1 is ~97% depleted in the injected worms, whereas levels of two control proteins, α-tubulin and a related actin binding protein, ANI-2, are unaffected. Figure courtesy of Amy Maddox.
Several additional advantages contribute to the usefulness of the C. elegans embryo as a model system. Of particular importance is their rapid and highly stereotypical mitotic divisions; the time between the onset of DNA condensation and the completion of furrow ingression during cytokinesis is approximately 14 minutes. The invariant nature of the first few divisions also facilitates the development of methods to assess the consequences of molecular perturbations. Quantitative methods have already been developed to monitor pronuclear migration (Figure 4; see also Albertson, 1984; O'Connell, 2000), cortical flows (for examples see Cheeks et al., 2004; Hird and White, 1993; Munro et al., 2004), chromosome segregation and spindle elongation during anaphase (for examples see Cheeseman et al., 2004; Grill et al., 2001; Labbe et al., 2004), and the asymmetric positioning of the spindle within the embryo (for examples see Colombo et al., 2003; Labbe et al., 2004; Tsou et al., 2002). Assay development has been accelerated by the emergence of microparticle bombardment mediated transformation (Praitis et al., 2001) and the availability of vectors containing regulatory sequences that direct efficient germline expression (Strome et al., 2001), which together have led to the generation of a large number of strains expressing fluorescent fusion proteins in the early embryo. Analysis of the mechanical consequences of depleting essential cell division proteins is also facilitated by the relatively weak DNA damage (Brauchle et al., 2003) and spindle checkpoints (Encalada et al., 2004), which allow the embryo to proceed through the cell cycle despite dramatic defects in nuclear structure, spindle assembly, chromosome segregation and centrosome function.
Genetic and RNAi-based approaches have identified a large number of loci important for cell division. Mutants in proteins required for cell division have been uncovered in screens of collections of nonconditional maternal effect and temperature sensitive mutations that result in embryonic lethality (for some examples see Encalada et al., 2000; Golden et al., 2000; Gönczy et al., 1999; Kemphues et al., 1988; O'Connell et al., 1998). The ability to reproducibly deplete oocytes of target proteins by RNAi, which can be performed by feeding, soaking or injection of hermaphrodites (see Reverse genetics), has also led to a series of genome-wide screens that identified a set of ~2100 genes required for embryonic viability (Fernandez et al., 2005; Fraser et al., 2000; Gönczy et al., 2000; Kamath et al., 2003; Maeda et al., 2001; Piano et al., 2000; Rual et al., 2004; Simmer et al., 2003; Sõnnichsen et al., 2005). Filming of embryos depleted of each of these 2100 gene products using differential interference contrast (DIC) microscopy has defined a set of 660 genes whose inhibition results in detectable defects during the first two cell divisions (Gönczy et al., 2000; Piano et al., 2000; Sõnnichsen et al., 2005; Zipperlen et al., 2001). Roughly half of these genes are specifically required for cell division processes such as chromosome segregation or cytokinesis, whereas the other half contributes to cell maintenance, via roles in processes such as translation and mitochondrial function (Sõnnichsen et al., 2005). The embryonic lethality resulting from RNAi of some of the 1440 genes for which no DIC defect was observed may be due to cell division defects that remain undetected, either due to incomplete penetrance of the RNAi or failure to score the resulting defects by DIC (for example subtle defects in chromosome segregation are very difficult to detect using this assay). Alternatively, depletion of many of these gene products may cause embryonic lethality due to developmental defects that preclude hatching.
Due to its accessibility to RNAi-based molecular perturbation, the first embryonic division that ensues following fertilization has been the most intensively studied. In this section, we provide a brief timeline for the events between fertilization and the completion of the first cytokinesis (outlined schematically in Figure 2; for reviews see Cowan and Hyman, 2004; Pelletier et al., 2004; Schneider and Bowerman, 2003).
Prior to fertilization, C. elegans oocytes are arrested in meiotic prophase with nuclei containing two copies of the diploid genome packaged into recombined bivalent chromosomes. The two rounds of meiotic chromosome segregation that generate the haploid oocyte pronucleus are completed in the zygote after the oocytes are fertilized. During each meiotic division, chromosome segregation is accomplished by a small acentriolar meiotic spindle that forms in the embryo anterior. During anaphase of meiosis I and again in meiosis II, the meiotic spindle associates with the cortex in an end-on fashion, and a highly asymmetric cytokinesis-like event extrudes a polar body (Figure 2; Albertson and Thomson, 1993; Clark-Maguire and Mains, 1994; Yang et al., 2003). In addition to the haploid pronucleus, the sperm brings a pair of centrioles into the oocyte, which lacks centrioles due to their degradation during oogenesis. As meiosis completes, the haploid oocyte and sperm-derived pronuclei, located at opposite ends of the embryo increase in size, becoming visible by DIC microscopy. After entering the oocyte, the sperm-derived centriole pair recruits pericentriolar material and acquires the ability to nucleate microtubules (O'Connell, 2000; Pelletier et al., 2004). Subsequently, the two sperm-derived centrioles separate, forming two centrosomes positioned on either side of the paternal pronucleus. Coincident with chromosome condensation during mitotic prophase, the pronuclei migrate towards each other. After the pronuclei meet, the nuclear-centrosome complex moves to the center of the embryo and rotates to align with the long axis of the embryo (Albertson, 1984; Hyman and White, 1987). The miotitc spindle begins to move towards the embryo posterior during metaphase (Labbe et al., 2004; Oegema et al., 2001), and asymmetric elongation during anaphase contributes to its posterior displacement (Albertson, 1984; Grill et al., 2001). Since the cleavage furrow bisects the mitotic spindle, this displacement results in an asymmetric first cleavage (For more on the mechanisms that generate this asymmetry see Asymmetric cell division and axis formation in the embryo).
Figure 2. Nuclear envelope dynamics in the C. elegans embryo. (Left column) Schematics illustrate the major features of the first division. Approximate times are in minutes:seconds after nuclear envelope breakdown. (Middle column) Images of each stage in a strain expressing GFP: beta-tubulin and GFP: histone to simultaneously visualize the microtubule cytoskeleton and the DNA. The top image of anaphase of meiosis II was taken from a movie collected by wide-field microscopy. All subsequent images are of the same embryo and were collected by spinning disk confocal microscopy (images courtesy of Carrie Cowan). (Right column) Stills from a timelapse sequence of an embryo expressing GFP:myosin II (images courtesy of Amy Maddox; strain provided by Ed Munro). For each time point, three spinning disk confocal images of the embryo surface were collected at 1 μm intervals and projected. During polar body extrusion, ruffles form over the entire cortex. Foci of myosin II are apparent at the base of each of the ingressing ruffles. As polarity is established, myosin II concentrates in an anterior cortical cap that persists into metaphase (Munro et al., 2004). During cytokinesis, an equatorial band of cortical myosin II forms in the plane defined by the spindle midzone. Figure courtesy of Amy Maddox.
The C. elegans nuclear envelope is structurally similar to that of vertebrates, consisting of two concentric membranes (outer and inner) enclosing a lumenal space, nuclear pore complexes that mediate bidirectional transport between the cytoplasm and the nucleus, and an underlying laminar network (Figure 3; Cohen et al., 2002). The molecular composition of the C. elegans inner nuclear membrane/lamina also resembles that in vertebrates (Table 1). C. elegans expresses a single B-type lamin (LMN-1; Liu et al., 2000; Riemer et al., 1993), that forms a meshwork of intermediate filaments beneath the inner nuclear membrane (reviewed in Gruenbaum et al., 2005). The C. elegans inner nuclear membrane/lamina also contains three proteins, Ce-emerin, CeMAN-1, and CeLem2, that contain a LEM domain, a defining 40 amino acid motif shared by a family of nuclear envelope proteins (Gruenbaum et al., 2002; Lee et al., 2000; Lin et al., 2000; Liu et al., 2003). LEM family proteins all bind to lamins (reviewed in Lee and Wilson, 2004) and to the small inner nuclear membrane associated protein BAF (Segura-Totten and Wilson, 2004; Zheng et al., 2000). Depletion of LMN-1, Ce-BAF, or simultaneous depletion of the LEM family proteins Ce-Emerin and Ce-MAN-1, results in a similar spectrum of defects in nuclear structure, chromosome condensation, and chromosome segregation (Liu et al., 2000; Liu et al., 2003; Margalit et al., 2005; Zheng et al., 2000).
Table 1. Nuclear envelope proteins
| C. elegans protein | C. elegans gene | Required for embryonic viability? | Vertebrate orthologue | TMR | Summary of localization and functional analysis | Selected references |
|---|---|---|---|---|---|---|
| Ce-lamin (LMN-1) | lmn-1 (DY3.2) | YES | Lamin-B | NO | B-type lamin expressed in all cell types; localizes to the nuclear side of the nuclear envelope; required for nuclear morphology, nuclear pore complex distribution, chromosome segregation and the localization of Ce-emerin. | Liu, 2000; Gruenbaum, 2002 |
| Ce-emerin (EMR-1) | emr-1 (M01D7.6) | NO | Emerin | YES | Integral component of the inner nuclear membrane; contains a LEM domain and interacts with Ce-Lamin; co-depletion with Ce-MAN-1 results in 100% embryonic lethality, chromosome condensation and segregation defects and mislocalization of Ce-BAF. | Gruenbaum, 2002; Liu, 2003 |
| Ce-MAN1 (LEM-2) | lem-2 (W01G7.5) | PARTIAL Depletion gives 15% lethality | LEM2 and MAN1 | YES | Integral component of the inner nuclear membrane; contains a LEM domain and interacts with Ce-Lamin and Ce-BAF in vitro. May require Ce-Lamin for its localization. | Liu, 2003 |
| Ce-BAF | baf-1 (B0464.7) | YES | BAF | NO | 10kDa soluble protein highly conserved among metazoans; localization to the NE requires emerin and MAN1; interacts with Ce-MAN1 in vitro; required for the proper organization of Ce-lamin, Ce-emerin and Ce-MAN1 on the nuclear envelope. | Liu, 2003; Margalit, 2005 |
| Matefin SUN-1 | mtf-1 sun-1 (F57 B1.2) | YES | None | NO | Interacts with lamin, but its Localization to the nuclear envelope does not require lamin; expressed in all embryonic cells until mid-embryogenesis and thereafter only in germline cells; required for ZYG-12 localization and the attachment of centrosomes to nuclei. | Fridkin, 2004; Malone, 2003 |
| ZYG-12 | zyg-12 (ZK546.1) | YES | SYNE | YES/NO* | Member of the Hook family of proteins; localizes to the nuclear envelope and accumulates around the centrosomes; required for the attachment of centrosomes to nuclei; * TMR present in some isoforms. | Malone, 2003 |
| UNC-83 | unc-83 (W01A11.3) | NO | ? | NO | Requires UNC-84 for its localization to the nuclear envelope; mutations disrupt nuclear migration in migrating P cells, hyp7 precursors, and the intestinal primordium. | Starr, 2001 |
| UNC-84 | unc-84 (F54B11.3) | NO | UNC84 | YES | Integral nuclear envelope protein required for nuclear migration and anchorage; expressed after the 26-cell stage; localization requires lamin; required to target UNC-83 and ANC-1, which function in nuclear migration and positioning, respectively, to the nuclear membrane; during nuclear positioning, may form a bridging complex with ANC-1 that spans the perinuclear space to connect the NE to actin cytoskeleton. | Starr, 2001; Malone, 1999; Lee, 2002; Starr, 2002 |
| ANC-1 | anc-1 (ZK973.6) | NO | Nesprin/ Nuance | YES | 955kDa protein orthologous to vertebrate NUANCE proteins; connects the nuclear envelope to the actin cytoskeleton during nuclear positioning in a UNC-84-dependent manner. | Starr, 2002 |
The dynamics of nuclear envelope disassembly and reassembly during the first mitotic division of the C. elegans embryo are illustrated in Figure 3. LMN-1 leaves the nuclear envelope during prometaphase (Lee et al., 2000; Liu et al., 2000). In contrast, inner nuclear membranes containing Ce-emerin and Ce-MAN-1 remain largely intact and surround the mitotic spindle everywhere except near spindle poles during metaphase and early anaphase, disassembling fully only during mid to late anaphase (Figure 3; Lee et al., 2000; Lee et al., 2002; V. Galy, P. Askjaer and I.W. Mattaj, personal communication). As the remnants of the old nuclear envelopes disperse, the formation of new nuclear envelopes around the segregated chromatin is detected beginning about 1 minute after anaphase onset (Figure 3; V. Galy, P. Askjaer and I.W. Mattaj, personal communication).
Figure 3. Nuclear envelope dynamics in the C. elegans embryo. Figure courtesy of Vincent Galy. (A) Schematics illustrate the cycle of nuclear envelope breakdown and reassembly. (B) Still images of the first mitotic division of wild-type embryos expressing YFP-Lamin (left) and GFP-MAN1 (right). Times on the right are relative to first metaphase to anaphase transition. Arrowheads indicate the reappearance of GFP-MAN1 around the chromatin at t=60 sec and YFP-Lamin at t=120 sec. White stars mark the positions of the centrosomes. Note the persistence of membranes containing GFP-MAN1 around the mitotic spindle and centrosomes. Scale bar = 10μm.
The molecular composition of the nuclear pore complexes (NPCs) is also similar to that in vertebrates. C. elegans orthologs of at least one component of each vertebrate NPC sub-complex have been identified (Galy et al., 2003; Kuznetsov et al., 2002). 17 genes encoding 19 nucleoporins are essential for embryonic viability. Depletion of 14 of these proteins results in defects in nuclear morphology and, in some cases, to reduced nuclear size consistent with a defect in nucleo-cytoplasmic transport (Galy et al., 2003). Nuclear envelope assembly also requires the small GTPase, Ran and the nuclear transport receptor importin-γ (IMB-1; Askjaer et al., 2002; Bamba et al., 2002; Walther et al., 2003). High concentrations of RanGTP in the vicinity of chromatin are thought to promote the dissociation of importin-γ from nucleoporins to trigger NPC assembly on the chromatin surface.
The site of sperm entry defines the embryo posterior (Goldstein and Hird, 1996). As the pronuclei become visible by DIC, the sperm-derived pronucleus and its associated centrosome(s) sit on the posterior cortex. The oocyte-derived pronucleus forms following two rounds of meiotic chromosome segregation, typically in the embryo anterior. The two pronuclei migrate towards each other coincident with chromosome condensation during the first mitotic prophase. Pronuclear migration consists of movement of the oocyte pronucleus towards the sperm pronucleus and movement of the sperm pronucleus away from the cortex towards the embryo center (Albertson, 1984; O'Connell et al., 2000). Initially, the oocyte pronucleus moves ~ 12 μm towards the posterior at a slow rate (~ 3.5 μm/min). As it approaches the sperm pronucleus, the oocyte pronucleus accelerates, moving an additional 10 μm at ~5-10 times its initial rate (Figure 4; Albertson, 1984; O'Connell et al., 2000). The sperm pronucleus begins its migration later than its female counterpart and travels at a slow rate of ~ 3.5 μm/min till it meets the oocyte pronucleus near the embryo center (~7 μm).
Figure 4. Kinetics of pronuclear migration in the C. elegans embryo. Timelapse DIC sequences of 20 wild-type and 16 gamma-tubulin depleted embryos were collected. The average position of the oocyte-derived and sperm-derived pronuclei along the anterior-posterior axis of the embryo is plotted (x-axis) as a function of time (y-axis). Times are with respect to pronuclear meeting. The sperm pronucleus moves towards the embryo anterior at a uniform slow rate. The oocyte pronucleus initially moves towards the embryo posterior at a similar slow rate (Slow phase), but then speeds up prior to nuclear meeting (Fast phase). Pronuclear migration depends on the timing of formation and size of centrosomal microtubule asters. In embryos, depleted of gamma-tubulin centrosomal microtubule asters form later than in wild-type (Hannak et al., 2002) and the fast phase of pronuclear migration is not observed. A similar phenotype has been characterized in embryos mutant for the centrosomal protein SPD-2, in which the centrosomal microtubule asters are highly attenuated (O'Connell et al., 2000). Figure courtesy of Eva Hannak and Stephan Grill.
Rapid movement of the oocyte pronucleus towards the sperm pronucleus and pronuclear meeting, both require an intact microtubule cytoskeleton (Strome and Wood, 1983). Two nuclear envelope proteins, ZYG-12 and SUN-1 recruit dynein to pronuclei, and are required for centrosomes to maintain their association with nuclei (Table 1; Malone et al., 2003). The centrosomes separate around the sperm pronucleus in a dynein dependent manner (Gönczy et al., 1999). As the pronuclei move towards each other, dynein on the oocyte pronucleus is thought to come into contact with microtubules emanating from the centrosomal asters associated with the sperm pronucleus. The fast phase of pronuclear migration and pronuclear meeting is thus mediated by nuclear envelope associated dynein pulling on the two centrosomal microtubule asters (Cowan and Hyman, 2004; Gönczy et al., 1999; Hamill et al., 2002; Malone et al., 2003; O'Connell et al., 2000; Schmidt et al., 2005).
In addition to the migration of the female pronucleus towards the male pronucleus, the migration and centration of the male pronucleus within the embryo has also been analyzed to distinguish between two possible models: (1) a “pushing mechanism,” in which the male pronucleus is pushed away from the cortex by the polymerization of astral microtubules and, (2) a “pulling mechanism” in which the male pronucleus is pulled by minus-end-directed motors anchored throughout the cytoplasm. Comparisons between simulations and actual migration indicate that the second “pulling” model is the primary mechanism (Kimura and Onami, 2005). Although microtubule-based mechanisms for pronuclear movement are the best characterized, some slow pronuclear movement is still observed in embryos in which the microtubule cytoskeleton is compromised, or which lack centrosomes or fail to recruit dynein to nuclei (Cowan and Hyman, 2004; Gönczy et al., 1999; Hamill et al., 2002; Malone et al., 2003; O'Connell et al., 2000; Schmidt et al., 2005). Consistent with these observations, correlative evidence suggests that cortical flows may also contribute to the slow phase of pronuclear migration (Hird and White, 1993).
Centrosomes consist of a single centriole or centriole pair surrounded by pericentriolar material that nucleates and anchors microtubules. Like the centrioles in Drosophila embryos (Callaini and Riparbelli, 1990), C. elegans centrioles are composed of nine singlet microtubules symmetrically positioned around a central tube (Figure 5B; Albertson, 1984; Kirkham et al., 2003; O'Connell et al., 2001; Wolf et al., 1978). Each cylindrical centriole is approximately 200– 250 nm in length and 175 nm in diameter. In contrast, vertebrate centrioles typically have nine triplet microtubules (Marshall, 2001; Preble et al., 2000). Consistent with this structural difference, the C. elegans genome lacks homologs of delta- and epsilon-tubulin, two tubulin family members required for the formation of triplet microtubules (Dutcher, 2003).
Figure 5. Mitotic kinetochores in the C. elegans embryo. (A) Schematic of the first cycle of centrosome duplication that immediately follows fertilization. Figure and electron micrographs courtesy of Amy Maddox and Thomas Müller-Reichert, respectively. Centrosome duplication consists of alternating cycles of new centriole assembly and splitting of the centriole pairs. A pair of centrioles (grey) enters the egg with the sperm during fertilization. The sperm centrioles acquire pericentriolar material (PCM; orange) in the egg and begin to nucleate microtubule asters. New daughter centrioles (green) assemble adjacent to each of the sperm centrioles so that by metaphase each centrosome contains two full-length centrioles, one inherited from the sperm and one that formed in the embryo cytoplasm. As the embryo enters mitosis, the amount of PCM around the centrioles and the number of microtubules nucleated by the centrosomes increases in a process called centrosome maturation. The centriole pairs split in late anaphase/telophase and the mitotic PCM breaks down, so that each daughter cell inherits a pair of small centrosomes each containing a single centriole. (B) Two images of prometaphase/metaphase centrioles with singlet microtubules in either cross section (arrows) or a longitudinal orientation (arrowhead) are shown. Bar is 250 nm.
During fertilization, the amoeboid sperm brings a pair of centrioles into the egg. After entering the egg, the centrioles recruit pericentriolar material and separate around the sperm-derived nucleus, forming two centrosomal microtubule asters (Figure 5; O'Connell, 2000; Pelletier et al., 2004). After they separate, a new daughter centriole begins to form adjacent to each sperm centriole. The centrosomes recruit additional pericentriolar material as the embryo enters mitosis in a process called centrosome maturation, increasing about 5 fold in size and nucleating capacity by metaphase (Hannak et al., 2001). Coincident with the recruitment of additional PCM, the daughter centrioles elongate, reaching full length by metaphase. In late anaphase/telophase the centriole pairs split. Concurrent with cytokinesis, the mitotic PCM disassembles, releasing two small centrosomes into each daughter cell.
Pericentriolar material is thought to consist of a proteinacious matrix, called the “centromatrix”, that recruits other PCM components (Bornens, 2002; Palazzo et al., 2000). Three centrosomal proteins, SPD-5, SPD-2 and AIR-1 (Aurora-A kinase), are required for the assembly of pericentriolar material (see Table 2 for a list of C. elegans centrosome/centriole components). SPD-5 is a coiled-coil protein thought to be a component of the centromatrix. In spd-5 embryos, no PCM forms around the centrioles, and no centrosomal microtubule asters are observed (Hamill et al., 2002). Severe defects in PCM assembly are also observed when SPD-2 or the aurora A kinase homolog AIR-1 are inhibited (Hannak et al., 2001; Kemp et al., 2004; O'Connell et al., 2000; Pelletier et al., 2004; Schumacher et al., 1998). In these embryos, centrosomal microtubule asters form, but are very small, and additional PCM fails to accumulate around the centrioles during mitotic entry.
Table 2. Centrosome proteins
| C. elegans protein | C. elegans gene | Required for embryonic viability? | Vertebrate orthologue | Summary of localization and functional analysis | Selected references |
|---|---|---|---|---|---|
| SAS-4 | sas-4 (F10E9.8) | YES | CPAP | Centriole protein required for centriole assembly; incorporated into centrioles during their assembly and does not subsequently exchange with the cytoplasmic pool; partial depletion leads to the formation of defective centrioles that recruit less than wild-type levels of PCM. | Kirkham, 2003; Leidel, 2003 |
| SAS-5 | sas-5 (F35B12.5) | YES | ? | Centriole protein required for centriole assembly; physically interacts with SAS-6; centriolar SAS-5 shuttles continuously between centrioles and the cytoplasm; requires ZYG-1 and SAS-6, but not SAS-4 to localize to centrioles; required for the localization of SAS-4 and SAS-6 to centrioles. Like SAS-4, partial depletion of SAS-5 leads to the formation of defective centrioles that recruit less than wild-type levels of PCM. | Delattre, 2004; Dammermann, 2004; Leidel, 2005 |
| SAS-6 | sas-6 (Y45F10D.9) | YES | HsSAS-6; DKFZP761 A078 | Centriole protein required for centriole assembly; like SAS-4, is recruited to centrioles once per cell cycle and does not subsequently exchange; physically interacts with SAS-5; requires ZYG-1 and SAS-5, but not SAS-4 to be recruited to centrioles; required for the localization of SAS-4 and SAS-5. Like SAS-4, partial depletion of SAS-5 leads to the formation of defective centrioles that recruit less than wild-type levels of PCM. The human homolog of SAS-6 localizes to centrioles and is required for centriole duplication. | Dammermann, 2004; Leidel, 2005 |
| ZYG-1 | zyg-1 (F59E12.2) | YES | ? | Centriole protein required for centriole assembly; localizes to centrioles throughout the cell cycle, but in contrast to SAS-4-6 is not detected on centrioles in sperm; required to target SAS-4, SAS-5 and SAS-6 to centrioles; atypical protein kinase that autophosphorylates in vitro, but in vivo substrates remain unknown; zyg-1 mutation interacts genetically with a mutation in spd-2. | O'Connell, 2001; Kemp, 2004; Delattre, 2004; Dammermann, 2004 |
| SPD-2 | spd-2 (F32H2.3) | YES | FLJ10352 | Bi-functional protein required for new centriole formation and for the assembly of the PCM around the centrioles; localizes to both centrioles and the PCM; spd-2 mutation interacts genetically with mutations in both zyg-1 and spd-5; the SPD-2 domain shares homology to the ASP protein family. | O'Connell, 2000; Kemp, 2004; Pelletier, 2004 |
| SPD-5 | spd-5 (F56A3.4) | YES | PCM component required for PCM assembly; required to recruit all tested PCM proteins; in SPD-5 depleted embryos centrosomal microtubule asters are absent and spindle assembly fails; depleted embryos also exhibit a severe defect in new centriole assembly, possibly due to failure to recruit gamma-tubulin to promote the formation of centriolar microtubules; a spd-5 mutation interacts genetically with mutations in spd-2 and dynein heavy chain. | Hamill, 2002; Kemp, 2004; Dammermann, 2004 | |
| AIR-1 | air-1 (K07C11.2) | YES | Aurora A | PCM component required for PCM assembly; localization appears more peripheral than that of gamma-tubulin, extending out along centrosomal microtubules; required to recruit additional PCM during centrosome maturation; in depleted embryos centrosomes remain small and spindle assembly fails. | Schumacher, 1998; Hannak, 2001 |
| gamma- tubulin | tbg-1 (F58A4.8) | YES | gamma- tubulin | Normal levels of SPD-5 are observed in depleted embryos indicating that it is not required for PCM formation; in depleted embryos, centrosomal microtubule asters fail to form during interphase, but robust asters assemble as embryos enter mitosis; although unknown mechanisms support partial assembly of mitotic centrosomal asters, the rate of centrosomal microtubule nucleation is severely compromised in depleted embryos indicating that the kinetically dominant pathway for the nucleation of centrosomal microtubules is gamma-tubulin dependent; depleted embryos also exhibit a severe defect in new centriole assembly. | Bobbinec, 2000; Strome, 2001; Hannak, 2002 |
| CeGrip-1 | gip-1 (H04J21.3) | YES | GCP3 | PCM component; orthologues form a heterotrimeric complex with gamma-tubulin in Xenopus, Drosophila, and S. cerevisiae; depletion prevents recruitment of gamma-tubulin to centrosomes; depletion phenotype is essentially identical to that observed in gamma tubulin depleted embryos. | Hannak, 2002 |
| CeGrip-2 | gip-2 (C45G3.3) | YES | GCP2 | PCM component; orthologues form a heterotrimeric complex with gamma-tubulin in Xenopus, Drosophila, and S. cerevisiae; depletion prevents recruitment of gamma-tubulin to centrosomes; depletion phenotype is essentially identical to that observed in gamma tubulin depleted embryos. | Hannak, 2002 |
| ZYG-9 | zyg-9 (F22B5.7) | YES | XMAP-215 | PCM component; physically interacts with TAC-1; this interaction is required for the efficient localization of the ZYG-9/TAC-1 complex to centrosomes; important regulator of microtubule dynamics; depletion phenotype is similar to that resulting from treatment of embryos with low doses of nocodozole which destabilize microtubules, pronuclear migration fails and a short spindle forms in the embryo posterior. | Matthews, 1998; Le Bot, 2003; Srayko, 2003; Bellanger, 2003 |
| TAC-1 | tac-1 (Y54E2A.3) | YES | TACC-1, 2, 3 | PCM component; physically interacts with ZYG-9; TAC-1 and ZYG-9 are dependent on each another for their localization to the centrosome. Depletion phenotype is similar to that resulting from treatment of embryos with low doses of nocodozole which destabilize microtubules, pronuclear migration fails and a short spindle forms in the embryo posterior. | Le Bot, 2003; Srayko, 2003; Bellanger, 2003 |
Several PCM proteins are required for the activity rather than the assembly of the PCM. The microtubule nucleating activity of the pericentriolar material requires the centrosomal tubulin isoform gamma-tubulin, and two gamma-tubulin associated proteins, CeGrip-1 and CeGrip-2. Embryos depleted of any of these proteins fail to form centrosomal microtubule asters during interphase (Hannak et al., 2002). As depleted embryos enter mitosis, relatively robust microtubule asters form around the centrosomes, suggesting that a gamma-tubulin independent pathway contributes to their assembly (Strome et al., 2001). However, chill and rewarm experiments reveal that the rate of centrosomal microtubule nucleation is highly compromised in gamma-tubulin depleted embryos and spindle assembly fails (Hannak et al., 2002; Strome et al., 2001). ZYG-9 and TAC-1 are two conserved PCM proteins that associate to form a complex that promotes microtubule growth. Embryos depleted of either protein exhibit defects in pronuclear migration, presumably because centrosomal microtubules are too short to capture the oocyte pronucleus, and small spindles form around the sperm chromatin in the embryo posterior (Bellanger and Gönczy, 2003; Le Bot et al., 2003; Matthews et al., 1998; Srayko et al., 2003).
Seven C. elegans proteins have been shown to contribute to new centriole assembly. Four of these, SAS-4 (Kirkham et al., 2003; Leidel and Gönczy, 2003), SAS-5 (Dammermann et al., 2004; Delattre et al., 2004; Schmutz and Spang, 2005), SAS-6 (Dammermann et al., 2004; Leidel et al., 2005), and the atypical protein kinase ZYG-1 (O'Connell et al., 2001), localize to centrioles and are specifically required for centriole formation. Depletion of any of these proteins by RNAi results in specific failure of centrosome duplication. In this characteristic phenotype (O'Connell et al., 2001), the two sperm centrioles separate after fertilization (as in wild-type) and organize the two centrosomes that form the poles of an apparently normal spindle during the first mitotic division. However, since daughter centrioles fail to form adjacent to each of the sperm centrioles, only one centriole instead of the normal two are released into each daughter cell when the centrosomes break down in telophase. Since each daughter cell contains only one centriole, it can form only one centrosome, and monopolar spindles are observed in both cells at the two-cell stage. SPD-2 is a bi-functional protein that localizes to centrioles as well as the PCM and is required for centriole assembly in addition to its role in PCM recruitment (Kemp et al., 2004; Pelletier et al., 2004). Embryos depleted of two pericentriolar material proteins, SPD-5 and gamma-tubulin, also exhibit severe defects in centriole assembly, leading to the idea that the PCM contributes to centriole assembly by recruiting gamma-tubulin, which may promote the assembly of the microtubules that make up the centriolar cylinders, as well as those nucleated by the PCM (Dammermann et al., 2004).
The formation of mitotic chromosomes begins when cohesin is loaded onto chromosomes and establishes cohesion between the duplicated chromosomes (sister chromatids) during DNA replication in S phase. Proteolytic cleavage of one of the cohesin subunits later in the cell cycle is thought to release the linkage between the sister chromatids to allow their segregation during anaphase (Haering and Nasmyth, 2003). The components of the C. elegans cohesin complex have been identified and depletion has revealed roles in mitotic chromosome segregation and the pairing of homologous chromosomes during meiosis (Table 3; Chan et al., 2003; Mito et al., 2003; Pasierbek et al., 2003).
Table 3. Mitotic chromosome proteins
| C. elegans protein | C. elegans gene | Required for embryonic viability? | Vertebrate orthologue | Summary of localization and functional analysis | Selected references |
|---|---|---|---|---|---|
| HIM-1 | him-1; smc-1; (F28B3.7) | YES | SMC-1 | Component of the cohesin complex; concentrated in the nucleus during interphase; by the metaphase to anaphase transition levels in the vicinity of the chromatin are reduced and protein appears excluded from the compacted chromatin. | Chan, 2003 |
| SMC-3 | smc-3; (Y47D3A.26) | YES | SMC-3 | Component of the cohesin complex; concentrated in the nucleus during interphase; by the metaphase to anaphase transition levels in the vicinity of the chromatin are reduced and protein appears excluded from the compacted chromatin. | Chan, 2003 |
| SCC-1 | scc-1; (F10G7.4) | YES | SCC-1 | Component of the cohesin complex; concentrated in the nucleus during interphase; by the metaphase to anaphase transition levels in the vicinity of the chromatin are reduced and protein appears to be excluded from the compacted chromatin; depletion results in a defect in mitotic chromosome segregation; the severity of the chromosome segregation defects is enhanced by simultaneous RNAi of him-1. | Chan, 2003; Mito, 2003 |
| SCC-3 | scc-3; (F18E2.3) | YES | SCC-3 | Component of the cohesin complex; concentrated in the nucleus during interphase; by the metaphase to anaphase transition levels in the vicinity of the chromatin are reduced and protein appears to be excluded from the compacted chromatin; depletion results in defects in chromosome segregation during mitosis and homologous pairing during meiosis. | Chan, 2003; Pasierbek, 2003; Moore, 2005 |
| TIM-1 | tim-1; csg-5; (Y75B8A.22) | YES | mTim1 | Component of the cohesin complex; concentrated in the nucleus during interphase; by the metaphase to anaphase transition levels in the vicinity of the chromatin are reduced and protein appears excluded from the compacted chromatin; RNAi of tim-1 in conjunction with him-1 results in more severe defects in chromosome segregation than either alone; required to recruit non-SMC cohesin subunits to chromatin before or during pre-meiotic S phase and to stabilize homologous chromosome associations during synapsis and sister chromatid cohesion in diplotene/ diakinesis. | Chan, 2003 |
| MIX-1 | mix-1; (M106.1) | YES | SMC-2 | Component of the condensin complex; required for mitotic chromosome condensation; chromosomal localization does not require kinetochore assembly; depletion results in severe chromatin bridging during anaphase; required for X-chromosome dosage compensation (repression). | Lieb, 1998; Hagstrom, 2002; Kaitna, 2002; Chan, 2004 |
| SMC-4 | smc-4; (F35G12.8) | YES | SMC-4 | Component of the condensin complex; required for mitotic chromosome condensation; chromosomal localization does not require kinetochore assembly; depletion leads to severe chromatin bridging during anaphase. | Hagstrom, 2002 |
| HCP-6 | hcp-6; (Y110A7A.1) | YES | CAP-D3, Heat (IIA) | Component of the condensin complex; required for mitotic chromosome condensation; chromosomal localization requires kinetochore assembly (fails to localize in CeCENP-C RNAi); required for mitotic chromosome condensation; depletion leads to severe chromatin bridging during anaphase. | Stear and Roth, 2002; Chan, 2004 |
| F55C5.4 | YES | CAP-G2; Heat (IIB) | Predicted component of the condensin complex based on sequence homology; no published localization or detailed depletion data. | Ono, 2003 | |
| KLE-2 | C29E4.2 | YES | CAP-H2; Kleisin γ (IIC) | Component of the condensin complex; required for mitotic chromosome condensation; depletion leads to severe chromatin bridging during anaphase. | Schleiffer, 2003 |
| AIR-2 | air-2; let-603; stu-7; cyk-6; (B0207.4) | YES | Aurora B | Aurora/Ip11- related serine/threonine protein kinase; chromosomal passenger protein, localizes to chromosomes between prophase and telophase and to microtubule bundles in the spindle midzone between anaphase and telophase; forms a complex with BIR-1, ICP-1, and CSC-1 and requires all three to localize to chromosomes; required for histone H3 phosphorylation, chromosome alignment and segregation, formation of the spindle midzone and cytokinesis. | Schumacher, 1998; Hsu et al., 2000; Kaitna, 2000; Severson, 2000; Oegema, 2001; Rogers 2002; Kaitna, 2002; Romano, 2003 |
| ICP-1, CeINCENP | icp-1; (Y39G10A R.13) | YES | INCENP | Chromosomal passenger protein, localizes to chromosomes between prophase and telophase and microtubule bundles in the spindle midzone between anaphase and telophase; required for chromosome alignment and segregation, formation of the spindle midzone and cytokinesis; chromosomal localization requires BIR-1 and CSC-1, but not AIR-2. Kinetochore assembly does not require ICP-1 and inhibiting kinetochore assembly by depletion of CENP-A (HCP-3) does not block the recruitment of ICP-1 to chromosomes. | Kaitna, 2000; Kaitna, 2002; Oegema, 2001; Romano, 2003 |
| BIR-1 | bir-1; (T27F2.3) | YES | Survivin | Chromosomal passenger protein, localizes to chromosomes between prophase and telophase and microtubule bundles in the spindle midzone between anaphase and telophase; chromosomal localization requires CSC-1 and ICP-1, but not AIR-2; required for chromosome alignment and segregation, formation of the spindle midzone and cytokinesis. | Fraser, 1999; Kaitna, 2000; Speliotes, 2000; Oegema, 2001; Romano, 2003 |
| KLP-19 | klp-19 | YES | kinesin-4; Kif4 | Localizes to the chromatin between the kinetochores; depletion results in aberrant chromosome motions during prometaphase, chromosome misalignment and the formation of multiple chromatin bridges during anaphase; thought to reduce the frequency with which individual diffuse kinetochores become attached to microtubules emanating from both spindle poles (merotelic attachment) by interacting with microtubules to stabilize an orientation in which the two kinetochores directly face the spindle poles. | Powers, 2004 |
Two additional protein complexes, condensin and the chromosomal passenger complex, also have critical roles in the formation and segregation of mitotic chromosomes. In contrast to vertebrates, which have two complexes, condensins I and II, that mediate spatially distinct aspects of condensation (Hirano, 2004), C. elegans has only condensin II (Table 3, Hagstrom et al., 2002; Ono et al., 2003). Chromosome condensation is delayed in condensin depleted embryos, but DNA compaction is ultimately achieved, indicating the existence of condensin-independent mechanisms that can compact mitotic chromatin. However, sister chromatid pairs formed in the absence of condensin are structurally defective and cannot be efficiently separated from each other by the mitotic spindle (Hagstrom et al., 2002; Kaitna et al., 2002; Chan et al., 2004). Concurrent with, but largely independent of condensation, kinetochores assemble to create chromosomal attachment sites for spindle microtubules (described in greater detail below). Like condensin, the chromosomal passenger protein complex (including the aurora B kinase, AIR-2, BIR-1, ICP-1 and CSC-1) is recruited to mitotic chromosomes as they form and is required for their proper segregation, (Schumacher et al., 1998; Severson et al., 2000; Kaitna, 2000; Oegema, 2001; Kaitna et al., 2002; Rogers 2002; Romano 2004; Hsu et al., 2000). Although it does not appear to be required for kinetochore assembly in C. elegans, the passenger complex plays important roles in chromosome structure and likely functions to correct aberrant kinetochore-microtubule attachments (reviewed in Vagnarelli and Earnshaw, 2004).
Eukaryotes can be divided into two groups based on the architecture of their mitotic chromosomes. Monocentric organisms assemble kinetochores on a single localized chromosomal site defined by the presence of dedicated centromeric chromatin. In contrast, holocentric organisms, including C. elegans, assemble diffuse kinetochores along the entire poleward face of each sister chromatid (Figure 6A). Holocentric chromosome architecture is present in widely divergent and highly successful metazoan lineages (including nematodes, hemipteran insects, and lower plants) that constitute a large part of the earth’s biomass, and C. elegans has emerged as an important model system for studying holocentric chromosome architecture (reviewed in Dernburg, 2001; Maddox et al., 2004).
Despite differences in the extent of the chromosomal length occupied by the kinetochore, the molecular composition of kinetochores in C. elegans and monocentric organisms is very similar (Table 4). Importantly, mitotic kinetochores in both monocentric and holocentric organisms assemble on a base of specialized centromeric chromatin defined by the presence of nucleosomes containing the histone H3 variant CENP-A (Buchwitz et al., 1999; Sullivan, 2001). Depletion of the C. elegans homolog of CENP-A leads to a characteristic “kinetochore-null” phenotype in which chromosomes fail to distribute over the spindle equator and to segregate (Oegema et al., 2001). This defect results from the failure to assemble kinetochores that can interact with spindle microtubules. To date only 4 proteins have been identified whose depletion gives a kinetochore-null defect: CENP-AHCP-3, CENP-CHCP-4, KNL-3 and KNL-1, which can be placed in a linear assembly hierarchy (Figure 6B) with CENP-AHCP-3 at the top (Moore and Roth, 2001; Oegema et al., 2001; Desai et al., 2003; Cheeseman et al., 2004). KNL-3 and KNL-1 are components of a 10-protein complex that is critical to forming the outer domains of the kinetochore that interact with spindle microtubules (Figure 6B; Cheeseman et al., 2004; Desai et al., 2003). A number of other kinetochore proteins have been identified whose depletion results in less severe chromosome segregation defects (for examples see Howe et al., 2001; Moore et al., 1999; for a detailed summary see Table 4). The reproducible phenotypes obtained following protein depletion have been useful in grouping proteins that function together in the context of the kinetochore (Figure 6B; Cheeseman et al., 2004).
Figure 6. Mitotic kinetochores in the C. elegans embryo. (A) Images comparing the localized kinetochores in a vertebrate tissue culture cell with monocentric chromosomes to the diffuse kinetochores in a C. elegans embryo with holocentric chromosomes. (B) Schematic illustrating the hierarchy for mitotic kinetochore assembly based on pair-wise depletion and localization assays, phenotypic analysis, and biochemical purifications. Dotted lines indicate groups of proteins that have been shown to co-purify from C. elegans extracts in immunoprecipitations and tagged protein isolations. The colored ovals group proteins together whose individual depletions result in a similar phenotype. (Red) “Kinetochore Null”/KNL proteins whose depletion is characterized by a failure to assemble kinetochores that are competent to form spindle microtubule attachments. Consequently, segregation is severely defective and spindle poles separate prematurely. (Blue) “MIS” proteins whose depletion results in relatively subtle chromosome segregation defects. In MIS embryos, kinetochore assembly occurs but at a slower rate and to a reduced extent relative to wild-type. (Yellow) “NDC” proteins whose depletion results in a chromosome alignment and segregation defects of intermediate severity, relative to the KNL and MIS classes. In NDC embryos, attachments that can sustain tension fail to form. Consequently, spindle poles separate prematurely. (Green) HCP/CLASP proteins, whose depletion causes sister chromatids to co-segregate to the same spindle pole. This defect likely arises from an inability to polymerize microtubules at kinetochores. (C) Schematic illustrating the temporal window during the first mitotic division when each of the indicated proteins localizes to kinetochores. Figure and images courtesy of Susan Kline-Smith and Arshad Desai, respectively.
Table 4. Kinetochore proteins
| C. elegans protein | C. elegans gene | Required for embryonic viability? | Vertebrate orthologue | Summary of localization and functional analysis | Selected references |
|---|---|---|---|---|---|
| CeCENP-A, HCP-3 | hcp-3; (F58A4.3) | YES | CENP-A | Histone H3-variant; thought to localize to chromatin throughout the cell cycle; found in nuclear foci during interphase and concentrated on the chromatin in a stripe that runs along the poleward face of each sister chromatid during mitosis; CeCENP-A is required for the localization of all other kinetochore components that have been tested; depletion results in failure to align and segregate mitotic chromosomes and premature spindle elongation due to the inability of the kinetochores to attach to spindle microtubules; a highly homologous gene (F54C8.2) is likely also targeted by dsRNAs generated against CeCENP-A. The relative abundance of CeCENP-A versus F54C8.2 is not known. C. briggsae does not have 2 genes encoding CENP-A like proteins, suggesting that F54C8.2 may have arisen from a recent duplication. | Buchwitz, 1999; Oegema, 2001 |
| CeCENP-C, HCP-4 | hcp-4; (T03F1.9) | YES | CENP-C | Kinetochore localization (prophase to telophase) requires CeCENP-A; CeCENP-C is required for the localization of all kinetochore proteins except CeCENP-A; associates with the KNL-1/3 complex and may act as an adaptor to connect centromeric chromatin to the outer kinetochore; plays a role in the resolution of CeCENP-A chromatin into two paired “lines” on the replicated chromosome; depletion results in failure to align and segregate mitotic chromosomes and premature spindle elongation. | Moore, 2001; Oegema, 2001; Desai, 2003; Cheeseman, 2004 |
| KNL-3 | knl-3 (T10B5.6) | YES | ? | Kinetochore localization (prophase to telophase) requires CeCENP-A and CeCENP-C; KNL-3 levels at the kinetochore are reduced in embryos depleted of MIS-12, KBP-1, KBP-2 and KNL-1; depletion results in failure to align and segregate mitotic chromosomes and premature spindle elongation; component of the 10-protein KNL-1/3 complex required to assemble an outer kinetochore that can make microtubule attachments. | Cheeseman, 2004 |
| KNL-1 | knl-1 |