Introduction

• A Transparent window into biology: A primer on Caenorhabditis elegans (2015) - Ann K. Corsi, Bruce Wightman, and Martin Chalfie html pdf

Biochemistry - Patricia Kuwabara, ed.

• Ascaroside signaling in C. elegans (2013) - Andreas H. Ludewig and Frank C. Schroeder html pdf
• Carbohydrates and glycosylation (2006) - Patricia Berninsone html pdf
• Intermediary metabolism (2009) - Bart P. Braeckman, Koen Houthoofd, Jacques R. Vanfleteren html pdf

Cell biology - James M. Kramer and Donald G. Moerman, eds.

• Autophagy in C. elegans (2009) - Alicia Meléndez and Beth Levine html pdf
• Basement membranes (2005) - James M. Kramer html pdf
• C. elegans as a model for membrane traffic (2014) - Ken Sato, Anne Norris, Miyuki Sato and Barth D. Grant html pdf
• Cell cycle regulation (2005) - Sander van den Heuvel html pdf
• Cell division (2006) - Anthony A. Hyman and Karen Oegema html pdf
• Cell fusions (2005) - Benjamin Podbilewicz html pdf
• The C. elegans eggshell (2018) - Kathryn K. Stein and Andy Golden html pdf
• Development, structure, and maintenance of C. elegans body wall muscle (2017) - Kathrin Gieseler, Hiroshi Qadota, and Guy M. Benian html pdf
• Epithelial junctions, cytoskeleton, and polarity (2014) - Gabriella Pásti and Michel Labouesse html pdf
• Membrane ion transport in non-excitable tissues (2014) - Keith Nehrke html pdf
• Sarcomere assembly in C. elegans muscle (2006) - Donald G. Moerman and Ben Williams html pdf
• Nematode sperm motility (2014) - Harold E. Smith html pdf
• The cadherin superfamily (2005) - Jonathan Pettitt html pdf
• The cuticle (2006) - Antony P. Page and Iain L. Johnstone html pdf
• The sensory cilia of Caenorhabditis elegans (2007) - Peter N. Inglis, Guangshuo Ou, Michel R. Leroux, and Jonathan M. Scholey html pdf
• Tubulins in C. elegans (2018) - Daryl D. Hurd html pdf

Developmental control mechanisms - James R. Priess and Geraldine Seydoux, eds.

• Development and migration of the C. elegans Q neuroblasts and their descendants (2014) - Teije C. Middelkoop and Hendrik C. Korswagen html pdf
• Embryological variation during nematode development (2006) - Einhard Schierenberg html pdf
• Epidermal morphogenesis (2005) - Andrew D. Chisholm and Jeff Hardin html pdf
• Gastrulation in C. elegans (2005) - Jeremy Nance, Jen-Yi Lee and Bob Goldstein html pdf
• Notch signaling in the C. elegans embryo (2005) - James R. Priess html pdf
• Polarity establishment, asymmetric division and segregation of fate determinants in early C. elegans embryos (2014) - Lesilee Rose and Pierre Gönczy html pdf
• Programmed cell death (2005) - Barbara Conradt and Ding Xue html pdf
• The C. elegans intestine (2006) - James D. McGhee html pdf
• The C. elegans pharynx: a model for organogenesis (2006) - Susan E. Mango html pdf
• Translational control of maternal RNAs (2005) - Thomas C. Evans and Craig P. Hunter html pdf

Disease models and drug discovery - Andres V. Maricq and Steven McIntire, eds.

• C. elegans and volatile anesthetics (2007) - P.G. Morgan, E.-B. Kayser and M.M. Sedensky html pdf
• Anthelmintic drugs and nematicides: studies in Caenorhabditis elegans (2014) - Lindy Holden-Dye and Robert J. Walker html pdf
• Obesity and the Regulation of Fat Metabolism (2007) - Kaveh Ashrafi html pdf

Nematode evolution and ecology - David H. A. Fitch, ed.

• Introduction to nematode evolution and ecology (2005) - David H. A. Fitch html pdf
• A quick tour of nematode diversity and the backbone of nematode phylogeny (2006) - Paul De Ley html pdf
• Ecology of Caenorhabditis species (2006) - Karin Kiontke and Walter Sudhaus html pdf
• Evolution of development in nematodes related to C. elegans (2005) - Ralf J. Sommer html pdf
• Interactions with microbial pathogens (2005) - Creg Darby html pdf
• Molecular evolution inferences from the C. elegans genome (2010) - Asher D. Cutter html pdf
• Natural variation and population genetics of C. elegans (2005) - Antoine Barrière and Marie-Anne Félix html pdf
• Nematode genome evolution (2005) - Avril Coghlan html pdf
• The phylogenetic relationships of Caenorhabditis and other rhabditids (2005) - Karin Kiontke and David H. A. Fitch html pdf

Genetics and genomics - Philip Anderson and Jonathan Hodgkin, eds.

• Introduction to genetics and genomics (2005) - Jonathan Hodgkin html pdf
• Caenorhabditis nomenclature (2018) - Mary Ann Tuli, Aric Daul and Tim Schedl html pdf

Genetics

• Complementation (2005) - Karen Yook html pdf
• Essential genes (2005) - Kenneth Kemphues html pdf
• Gene duplications and genetic redundancy in C. elegans (2005) - Alison Woollard html pdf
• Genetic enhancers (2005) - Robert K. Herman and John Yochem html pdf
• Genetic mosaics (2005) - John Yochem and Robert K. Herman html pdf
• Genetic suppression (2005) - Jonathan Hodgkin html pdf
• Karyotype, ploidy and gene dosage (2005) - Jonathan Hodgkin html pdf

Genomics

• C. elegans network biology: a beginning (2006) - Fabio Piano, Kristin C. Gunsalus, David E. Hill, and Marc Vidal html pdf
• C. elegans noncoding RNA genes (2005) - Sean R. Eddy, Shawn L. Stricklin, and Sam Griffiths-Jones html pdf
• Genomic classification of protein-coding gene families (2005) - Erich Schwarz html pdf
• Mitochondrial genetics (2005) - Bernard Lemire html pdf
• Overview of gene structure in C. elegans (2014) - John Spieth, Daniel Lawson, Paul Davis, Gary Williams and Kevin Howe html pdf
• Transposons in C. elegans (2005) - Jean-Louis Bessereau html pdf

Molecular biology - Julie Ahringer, ed.

• Pre-mRNA splicing and its regulation in Caenorhabditis elegans (2012) - Alan Zahler html pdf
• C. elegans microRNAs (2005) - Monica C. Vella and Frank J. Slack html pdf
• Endogenous RNAi pathways in C. elegans (2014) - Allison C. Billi, Sylvia E. J. Fischer, and John K. Kim html pdf
• Mechanism and regulation of translation in C. elegans (2006) - Robert E. Rhoads, Tzvetanka D. Dinkova and Nadia L. Korneeva html pdf
• Operon and non-operon gene clusters in the C. elegans genome (2015) - Thomas Blumenthal, Paul Davis and Alfonso Garrido-Lecca html pdf
• Replication and repair (2014) - Ann Rose html pdf
• RNA-binding proteins (2006) - Min-Ho Lee and Tim Schedl html pdf
• Roles of chromatin factors in C. elegans development (2007) - Mingxue Cui and Min Han html pdf
• Trans-splicing and operons in C. elegans (2012) - Thomas Blumenthal html pdf
• Transcription mechanisms (2006) - T. Keith Blackwell and Amy K. Walker html pdf
• Transcriptional regulation of gene expression in C. elegans (2013) - Valerie Reinke, Michael Krause and Peter Okkema html pdf
• Ubiquitin-mediated pathways in C. elegans (2005) - Edward T. Kipreos html pdf

Neurobiology and behavior - Erik M. Jorgensen and Joshua M. Kaplan, eds.

Behavior

• C. elegans feeding (2012) - Leon Avery and Young-Jai You html pdf
• Egg-laying (2005) - William Schafer html pdf
• Male mating behavior (2006) - Maureen M. Barr and L. Rene Garcia html pdf

Development

• Neurogenesis in the nematode Caenorhabditis elegans (2010) - Oliver Hobert html pdf
• Synaptogenesis (2005) - Yishi Jin html pdf

Function

• The neuronal genome of Caenorhabditis elegans (2013) - Oliver Hobert html pdf
• Potassium channels in C. elegans (2005) - L. Salkoff, A.D. Wei, B. Baban, A. Butler, G. Fawcett, G. Ferreira, and C.M. Santi html pdf
• Synaptic function (2007) - Janet Richmond html pdf

Neurotransmitters

• Acetylcholine (2006) - James B. Rand html pdf
• Biogenic amine neurotransmitters in C. elegans (2006) - Daniel L. Chase and Michael R. Koelle html pdf
• Ethanol (2006) - Steven L. McIntire html pdf
• GABA (2005) - Erik M. Jorgensen html pdf
• Ionotropic glutamate receptors: genetics, behavior and electrophysiology (2006) - Penelope J. Brockie and Andres V. Maricq html pdf
• Neuropeptides (2008) - Chris Li and Kyuhyung Kim html pdf

Sensory modalities

• Chemosensation in C. elegans (2006) - Cornelia I. Bargmann html pdf
• Mechanosensation (2006) - Miriam Goodman html pdf

Post-embryonic development - Monica Driscoll and Garth Patterson, eds.

• Dauer (2007) - Patrick J. Hu html pdf
• Gene expression changes associated with aging in C. elegans (2007) - Tamara R. Golden, and Simon Melov html pdf
• The measurement and analysis of age-related changes in Caenorhabditis elegans (2007) - James J. Collins, Cheng Huang, Stacie Hughes and Kerry Kornfeld html pdf

Sex determination - Barbara J. Meyer, ed.

• Introduction to sex determination (2005) - Robert K. Herman html pdf
• Hermaphrodite cell-fate specification (2006) - Michael Herman html pdf
• Male development (2005) - Scott W. Emmons html pdf
• Morphogenesis of the vulva and the vulval-uterine connection (2012) - Bhagwati P. Gupta, Wendy Hanna-Rose and Paul W. Sternberg html pdf
• Sex determination in the germ line (2007) - Ronald Ellis and Tim Schedl html pdf
• Somatic sex determination (2006) - David Zarkower html pdf
• The evolution of nematode sex determination: C. elegans as a reference point for comparative biology (2005) - Eric S. Haag html pdf
• Vulval development (2005) - Paul W. Sternberg html pdf
• X-chromosome dosage compensation (2005) - Barbara J. Meyer html pdf

Signal transduction - Iva Greenwald, ed.

• Introduction to signal transduction (2005) - Iva Greenwald html pdf

Kinases

• Genomic overview of protein kinases (2005) - Gerard Manning html pdf
• Canonical RTK-Ras-ERK signaling and related alternative pathways (2013) - Meera V. Sundaram html pdf
• Eph receptor signaling in C. elegans (2012) - Michael A. Miller and Ian D. Chin-Sang html pdf
• Heterotrimeric G proteins in C. elegans (2006) - Carol Bastiani and Jane Mendel html pdf
• Neurotransmitter signaling through heterotrimeric G proteins: insights from studies in C. elegans (2018) - Michael R. Koelle html pdf
• Homologs of the Hh signalling network in C. elegans (2006) - Thomas R. Burglin and Patricia E. Kuwabara html pdf
• Insulin/insulin-like growth factor signaling in C. elegans (2013) - Coleen T. Murphy and Patrick J. Hu html pdf
• Notch signaling: genetics and structure (2012) - Iva Greenwald and Rhett Kovall html pdf
• Nuclear receptor signal transduction in C. elegans (2015) - Adam Antebi html pdf
• Signaling in the innate immune response (2018) - Dennis H. Kim and Jonathan J. Ewbank html pdf
• Small GTPases (2018) - David J. Reiner and Erik A. Lundquist html pdf
• TGF-β signaling in C. elegans (2013) - Tina L. Gumienny and Cathy Savage-Dunn html pdf
• The putative chemoreceptor families of C. elegans (2006) - Hugh M. Robertson and James H. Thomas html pdf
• Wnt signaling (2005) - David Eisenmann html pdf

The germ line - Judith Kimble and Susan Strome, eds.

• Introduction to the germ line (2005) - E. Jane Albert Hubbard and David Greenstein html pdf
• Control of oocyte meiotic maturation and fertilization (2005) - David Greenstein html pdf
• Germline chromatin (2006) - Christine E. Schaner and William G. Kelly html pdf
• Germline genomics (2006) - Valerie Reinke html pdf
• Germline proliferation and its control (2005) - Judith Kimble and Sarah Crittenden html pdf
• Germline survival and apoptosis (2008) - Anton Gartner, Peter R. Boag and T. Keith Blackwell html pdf
• Meiosis (2017) - Kenneth J Hillers, Verena Jantsch, Enrique Martinez-Perez, and Judith L Yanowitz html pdf
• Specification of the germ line (2005) - Susan Strome html pdf
• Spermatogenesis (2006) - Steven W. L'Hernault html pdf

Biology and genome of nematodes other than C. elegans - - Marie-Anne Félix, Robin B. Gasser and David Bird, eds.

• Genomics and biology of the nematode Caenorhabditis. briggsae (2007) - Bhagwati P. Gupta, Robert Johnsen, and Nansheng Chen html pdf
• The biology and genome of Heterorhabditis bacteriophora (2006) - Todd Ciche html pdf
• The biology of Strongyloides spp.(2015) - Mark E. Viney and James B. Lok html pdf
• Oscheius tipulae (2006) - Marie-Anne Félix html pdf
• Pristionchus pacificus (2006) - Ralf J. Sommer html pdf
• Biology and genome of Trichinella spiralis (2006) - Makedonka Mitreva and Douglas P. Jasmer html pdf

WormHistory - Paul W. Sternberg, ed.

• Getting into the mind of the worm - a personal view (2013) - John G. White html pdf
• History of research on C. elegans and other free-living nematodes as model organisms (2017) - Victor Marc Nigon and Marie-Anne Félix html pdf

WormMethods - Oliver Hobert, ed.

Basic methods for C. elegans

• Maintenance of C. elegans (2006) - Theresa Stiernagle html pdf
• Nomarski images for learning the anatomy, with tips for mosaic analysis (2006) - John Yochem html pdf
• A biologist's guide to statistical thinking and analysis (2013) - David S. Fay and Ken Gerow html pdf
• Web resources for C. elegans studies (2005) - Raymond Lee, ed. html pdf
• An introduction to the UCSC Genome Browser (2013) - Raymond Lee html pdf

Forward and reverse genetics

• Classical genetic methods (2013) - David S. Fay html pdf
• Forward and reverse mutagenesis in C. elegans (2014) - Lena M. Kutscher and Shai Shaham html pdf
• Genetic balancers (2006) - Mark L. Edgley, David L. Baillie, Donald L. Riddle, and Ann M. Rose html pdf
• Genetic dissection of developmental pathways (2006) - Linda S. Huang and Paul W. Sternberg html pdf
• Reverse genetics (2006) - Julie Ahringer, ed. html pdf

Microinjection and transformation

• C. elegans gene transformation by microparticle bombardment (2013) - Peter J. Schweinsberg and Barth D. Grant html pdf
• Transformation and microinjection (2006) - Thomas C. Evans, ed. html pdf
• Transgenic solutions for the germline (2010) - Christopher Merritt, Christopher M. Gallo, Dominique Rasoloson and Geraldine Seydoux html pdf

Measuring and monitoring gene expression

• Immunohistochemistry (2006) - Janet S. Duerr html pdf
• RNA in situ hybridization of dissected gonads (2006) - Min-Ho Lee and Tim Schedl html pdf
• In situ hybridization on whole mount embryos of C. elegans (2005/2015) - Tomoko Motohashi, Keiko Hirono, and Yuji Kohara html pdf
• Protocols for large scale in situ hybridization on C. elegans larvae (2006) - Tomoko Motohashi, Hiroaki Tabara and Yuji Kohara html pdf
• Reporter gene fusions (2006) - Thomas Boulin, John F. Etchberger, Oliver Hobert html pdf
• DNA microarrays (2006) - Douglas S. Portman html pdf
• Single molecule fluorescent in situ hybridization (smFISH) of C. elegans worms and embryos (2012) - Ni Ji and Alexander van Oudenaarden html pdf

Microscopy and other instrumentation

• Keeping track of worm trackers (2012) - Steven Husson, Wagner Steuer Costa, Cornelia Schmitt, and Alexander Gottschalk html pdf
• Microfluidics as a tool for C. elegans research (2013) - Adriana San-Miguel and Hang Lu html pdf

Cell and molecular biology

• Biochemistry and molecular biology (2006) - Albertha. J. M. Walhout and Simon J. Boulton html pdf
• Methods in cell biology (2006) - Shai Shaham, ed. html pdf
• Cell isolation and culture (2013) - Sihui Zhang and Jeffrey R. Kuhn html pdf
• Mass spectrometry-based shotgun proteomic analysis of C. elegans protein complexes (2014) - Bryan R. Fonslow, James J. Moresco, Patricia G. Tu, Antti P. Aalto, Amy E. Pasquinelli, Andrew G. Dillin and John R. Yates III html pdf
• Modern techniques for the analysis of chromatin and nuclear organization in C. elegans (2014) - Peter Askjaer, Sevinç Ercan and Peter Meister html pdf

Behavioral assays

• Behavior (2006) - Anne Hart, ed. html pdf
• Assaying mechanosensation (2014) - Martin Chalfie, Anne C. Hart, Catharine H. Rankin, and Miriam B. Goodman html pdf
• Methods for measuring pharyngeal behaviors (2012) - David Raizen, Bo-mi Song, Nick Trojanowski, and Young-Jai You html pdf
• Thermotaxis navigation behavior (2014) - Miriam B. Goodman, Mason Klein, Samuel Lasse, Linjiao Luo, Ikue Mori, Aravi Samuel, Piali Sengupta, and Dong Wang html pdf
• Working with dauer larvae (2018) - Xantha Karp html pdf

Neurophysiological methods

• Neurophysiological methods in C. elegans: an introduction (2006) - William R. Schafer html pdf
• Culture of embryonic C. elegans cells for electrophysiological and pharmacological analyses (2006) - Laura Bianchi and Monica Driscoll html pdf
• Electrophysiological recordings from the neuromuscular junction of C. elegans (2006) - Janet E. Richmond html pdf
• Electrophysiological recordings from the pharynx (2006) - Alan Cook, Christopher J. Franks and Lindy Holden-Dye html pdf
• Heterologous expression of C. elegans ion channels in Xenopus oocytes (2006) - Laura Bianchi and Monica Driscoll html pdf
• Imaging the activity of neurons and muscles (2006) - Rex A. Kerr html pdf

Methods for nematode species other than C. elegans

• Caenorhabditis briggsae methods (2006) - Scott Baird and Helen Chamberlin html pdf
• Isolation of C. elegans and related nematodes (2014) - Antoine Barrière and Marie-Anne Félix html pdf
• Pristionchus pacificus protocols (2012) - Andre Pires da Silva html pdf
• Pristionchus pacificus genomics: from genetics to genome sequence (2006) - Christoph Dieterich, Waltraud Roeseler and Jagan Srinivasan html pdf
• Strongyloides stercoralis: a model for translational research on parasitic nematode biology (2007) - James B. Lok html pdf
• Transgenesis in animal parasitic nematodes: Strongyloides spp. and Brugia spp. (2013) - James B. Lok and Thomas R. Unnasch html pdf

Discuss WormBook topics on the WormBase forum